- An Apology of an Appeal: Also an Epistle to the True-Hearted Nobility
- Vindication of the Churches Commonly Called Independent
- Gleanings In The Gospels
- Conformitie's Deformity. In a Dialogue Between Conformity, and Conscience. Wherein the Main Head of All the Controversies in These Times, Concerning Church-government, is Asserted and Maintained; as W
- The Gospel