- Journal of the Franklin Institute
- Notes and papers of or connected with Persifor Frazer in Glasslough, Ireland: and his son John Frazer of Philadelphia, 1735 to 1765
- A manual of the study of documents to establish the individual character of handwriting and to detect fraud and forgery: including several new methods of research.
- Geological & Mineral Studies in Nuevo Leon and Coahuila, Mexico: A Paper Read Before the American Institute of Mining Engineers at the Cincinnati Meeting, February 1884
- Bibliotics; or, The Study of Documents; Determination of the Individual Character of Handwriting and Detection of Fraud and Forgery;