Poly(adp-Ribose) Polymerase: Methods and Protocols

Part I: Detection and Quantification of pADPr

1. Quantitation of Poly(ADP-ribose) by Isotope Dilution Mass Spectrometry

Tabea Zubel, Rita Martello, Alexander B?rkle, and Aswin Mangerich

2. Quantification of PARP Activity in Human Tissues: Ex Vivo Assays in Blood Cells and Immunohistochemistry in Human Biopsies

Eszter M. Horvath, Zsuzsanna K. Zsengell?r, and Csaba Szabo

3. Detecting and Quantifying pADPr In Vivo

4. Compartment-Specific Poly-ADP-Ribose Formation as a Biosensor for Subcellular NAD Pools

Magali R. VanLinden, Marc Niere, Andrey A. Nikiforov, Mathias Ziegler, and Christian D?lle

5. Cell Cycle Resolved Measurements of Poly(ADP-ribose) Formation and DNA Damage Signaling by Quantitative Image-Based Cytometry

Jone Michelena and Matthias Altmeyer

Part II: Identification of Protein Targets

6. Detecting Protein ADP-Ribosylation Using a Clickable Aminooxy Probe

Rory K. Morgan and Michael S. Cohen

7. ADP-Ribosylated Peptide Enrichment and Site Identification: The Phosphodiesterase-Based Method

Casey M. Daniels, Shao-En Ong, and Anthony K.L. Leung

8. Using Clickable NAD+ Analogues to Label Substrate Proteins of PARPs

Lu Zhang and Hening Lin

9. Identification of Protein Substrates of Specific PARP Enzymes Using Analog-Sensitive PARP Mutants and a 'Clickable' NAD+ Analog

Bryan A. Gibson and W. Lee Kraus

10. Identification of ADP-Ribose Acceptor Sites on In Vitro Modified Proteins by Liquid Chromatography - Tandem Mass Spectrometry

Mario Leutert, Vera Bilan, Peter Gehrig, and Michael O. Hottiger

11. Proteome-Wide Identification of In Vivo ADP-Ribose Acceptor Sites by Liquid Chromatography -Tandem Mass Spectrometry

Part III: Functional Analysis

12. Poly(ADP-Ribose)-Dependent Chromatin Remodeling in DNA Repair

Th?o Lebeaupin, Rebecca Smith, S?bastien Huet, and Gyula Timinszky

13. Methods to Assess the Role of Poly(ADP-Ribose) Polymerases in Regulating Mitochondrial Oxidative Function

Edit Mik?, T?nde Kov?cs, Tam?s Fodor, and P?ter Bai

14. Approaches for Investigating Translational Regulation Controlled by PARP1: Biotin-Based UV-Crosslinking and Luciferase Reporter Assay

Yingbiao Ji

15. Methodology to Identify Poly-ADP-Ribose Polymerase 1 (PARP1)