Population Epigenetics: Methods and Protocols

1. Library Construction for High-Throughput Mobile Element Identification and Genotyping

Hongseok Ha, Nan Wang, and Jinchuan Xing

Gwen Hoad and Kristina Harrison

3. Determining Epigenetic Targets: A Beginner's Guide to Identifying Genome Functionality Through Database Analysis

Elizabeth A. Hay, Philip Cowie, and Alasdair MacKenzie

4. Detecting Spatial Chromatin Organization by Chromosome Conformation Capture II: Genome-Wide Profiling by Hi-C

Matteo Vietri Rudan, Suzana Hadjur, and Tom Sexton

5. Quantitative Analysis of Intra-chromosomal Contacts: The 3C-qPCR Method

Vuthy Ea, Franck Court, and Thierry Forne

6. 5-Hydroxymethylcytosine Profiling in Human DNA

John P. Thomson, Colm E. Nestor, and Richard R. Meehan

7. Adjusting for Cell Type Composition in DNA Methylation Data Using a Regression-Based Approach

8. Correcting for Sample Heterogeneity in Methylome-Wide Association Studies

9. Nano-MeDIP-seq Methylome Analysis Using Low DNA Concentrations

Lee M. Butcher and Stephan Beck

10. Bisulfite Conversion of DNA from Tissues, Cell Lines, Buffy Coat, FFPE Tissues, Microdissected Cells, Swabs, Sputum, Aspirates, Lavages, Effusions, Plasma, Serum, and Urine

Maria Jung, Barbara Uhl, Glen Kristiansen, and Dimo Dietrich

11. Analysis of Imprinted Gene Regulation

David A. Skaar and Randy L. Jirtle

12. Statistical Methods for Methylation Data

Graham W Horgan and Sok-Peng Chua